example readme.txt

This is a list of the files in the "examples" folder.  They relate to the
tutorial in the manual, with some additional files related to creating
"superindividual" or continent files.

data_unlinked.chunkcounts.out:
	150 regions of linked data processed with the nolinkage model
data_linked.chunkcounts.out:
	150 regions of linked data processed with the linkage model
unlinked_test.xml:
	MCMC sample of the unlinked data, created with the GUI.
unlinked_test_tree.xml:
	Tree file created from unlinked_test.xml, with the GUI.
create_superpop.R:
	An R script to generate "superpopulation" -F force files.
data_super.force:
	An example "superpopulation" -F force file, leaving the
	difficult to separate individuals as individuals, and the
	other populations as "superpopulations".
unlinked_test_F.xml:
	MCMC sample of the force file, created with the command line.
	The comment field of the file shows the command used.
unlinked_test_F_tree.xml:
	Tree created from unlinked_test_F.xml using the command line.
	The comment field of the file shows the command used.
unlinked_test.fs:
	Example Finestructure save file, as created by the tutorial.
